inbo/camtraptor
Read, Explore and Visualize Camera Trap Data Packages

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tests/testthat/_snaps/write_eml.md

tests/testthat/_snaps/write_eml.md
In inbo/camtraptor: Read, Explore and Visualize Camera Trap Data Packages

write_eml() can write an eml

Code
  eml
Output
  $packageId
  NULL

  $system
  [1] "uuid"

  $dataset
  $dataset$title
  [1] "a valid title"

  $dataset$abstract
  $dataset$abstract$para
  [1] "<![CDATA[<span></span>This camera trap dataset is derived from the <a href=\"https://agouti.eu\">Agouti</a> project <em>MICA - Muskrat and Coypu</em>. Data have been standardized to Darwin Core using the <a href=\"https://inbo.github.io/camtraptor/\">camtraptor</a> R package and only include observations (and associated media) of animals. Excluded are records that document blank or unclassified media, vehicles and observations of humans. Geospatial coordinates are provided as is. The original dataset description follows.]]>"


  $dataset$creator
  $dataset$creator[[1]]
  '@id': ~
  address: ~
  electronicMailAddress: tim.adriaens@inbo.be
  individualName:
    givenName: Tim
    surName: Adriaens
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[2]]
  '@id': ~
  address: ~
  electronicMailAddress: emma.cartuyvels@inbo.be
  individualName:
    givenName: Emma
    surName: Cartuyvels
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[3]]
  '@id': ~
  address: ~
  electronicMailAddress: jim.casaer@inbo.be
  individualName:
    givenName: Jim
    surName: Casaer
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[4]]
  '@id': ~
  address: ~
  electronicMailAddress: adeboer@wetterskipfryslan.nl
  individualName:
    givenName: Abel
    surName: De Boer
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[5]]
  '@id': ~
  address: ~
  electronicMailAddress: peter.desmet@inbo.be
  individualName:
    givenName: Peter
    surName: Desmet
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId:
    directory: https://orcid.org/
    '': 0000-0002-8442-8025

  $dataset$creator[[6]]
  '@id': ~
  address: ~
  electronicMailAddress: dennis.donckers2@telenet.be
  individualName:
    givenName: Dennis
    surName: Donckers
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[7]]
  '@id': ~
  address: ~
  electronicMailAddress: foersterheiko@gmx.de
  individualName:
    givenName: Heiko
    surName: Fritz
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[8]]
  '@id': ~
  address: ~
  electronicMailAddress: lilja.fromme@tiho-hannover.de
  individualName:
    givenName: Lilja
    surName: Fromme
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[9]]
  '@id': ~
  address: ~
  electronicMailAddress: friederike.gethoeffer@tiho-hannover.de
  individualName:
    givenName: Friederike
    surName: Gethöffer
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[10]]
  '@id': ~
  address: ~
  electronicMailAddress: frank.huysentruyt@inbo.be
  individualName:
    givenName: Frank
    surName: Huysentruyt
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[11]]
  '@id': ~
  address: ~
  electronicMailAddress: lydia.liebgott@tiho-hannover.de
  individualName:
    givenName: Lydia
    surName: Liebgott
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[12]]
  '@id': ~
  address: ~
  electronicMailAddress: yorick.liefting@wur.nl
  individualName:
    givenName: Yorick
    surName: Liefting
  onlineUrl: .na.character
  organizationName: Wageningen University
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[13]]
  '@id': ~
  address: ~
  electronicMailAddress: j.lodewijkx@vmm.be
  individualName:
    givenName: Jan
    surName: Lodewijkx
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[14]]
  '@id': ~
  address: ~
  electronicMailAddress: claudia.maistrelli@tiho-hannover.de
  individualName:
    givenName: Claudia
    surName: Maistrelli
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[15]]
  '@id': ~
  address: ~
  electronicMailAddress: bjoern.matthies@lwk-niedersachsen.de
  individualName:
    givenName: Björn
    surName: Matthies
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[16]]
  '@id': ~
  address: ~
  electronicMailAddress: axel.neukermans@inbo.be
  individualName:
    givenName: Axel
    surName: Neukermans
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[17]]
  '@id': ~
  address: ~
  electronicMailAddress: brecht.neukermans@inbo.be
  individualName:
    givenName: Brecht
    surName: Neukermans
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[18]]
  '@id': ~
  address: ~
  electronicMailAddress: kurt.schamp@inbo.be
  individualName:
    givenName: Kurt
    surName: Schamp
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[19]]
  '@id': ~
  address: ~
  electronicMailAddress: d.slootmaekers@vmm.be
  individualName:
    givenName: Dan
    surName: Slootmaekers
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[20]]
  '@id': ~
  address: ~
  electronicMailAddress: daniel.vanderbeeck@gmail.com
  individualName:
    givenName: Danny
    surName: Van der beeck
  onlineUrl: .na.character
  organizationName: .na.character
  phone: ~
  positionName: ~
  userId: ~

  $dataset$creator[[21]]
  '@id': ~
  address: ~
  electronicMailAddress: yasmine.verzelen@inbo.be
  individualName:
    givenName: Yasmine
    surName: Verzelen
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~


  $dataset$contact
  '@id': ~
  address: ~
  electronicMailAddress: tim.adriaens@inbo.be
  individualName:
    givenName: Tim
    surName: Adriaens
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$metadataProvider
  '@id': ~
  address: ~
  electronicMailAddress: tim.adriaens@inbo.be
  individualName:
    givenName: Tim
    surName: Adriaens
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~

  $dataset$keywordSet
  $dataset$keywordSet[[1]]
  $dataset$keywordSet[[1]]$keywordThesaurus
  [1] "n/a"

  $dataset$keywordSet[[1]]$keyword
  [1] "camera traps"



  $dataset$coverage
  geographicCoverage:
    geographicDescription: []
    boundingCoordinates:
      westBoundingCoordinate: 3.51755
      eastBoundingCoordinate: 7.0243
      northBoundingCoordinate: 53.27052
      southBoundingCoordinate: 50.69905
      boundingAltitudes:
        altitudeMinimum: []
        altitudeMaximum: []
        altitudeUnits: []
  taxonomicCoverage:
    taxonomicClassification:
    - taxonRankName: Species
      taxonRankValue: Anas platyrhynchos
    - taxonRankName: Species
      taxonRankValue: Anas strepera
    - taxonRankName: Species
      taxonRankValue: Ardea
    - taxonRankName: Species
      taxonRankValue: Ardea cinerea
    - taxonRankName: Species
      taxonRankValue: Castor fiber
    - taxonRankName: Species
      taxonRankValue: Homo sapiens
    - taxonRankName: Species
      taxonRankValue: Martes foina
    - taxonRankName: Species
      taxonRankValue: Mustela putorius
    - taxonRankName: Species
      taxonRankValue: Vulpes vulpes
  temporalCoverage:
    rangeOfDates:
      beginDate:
        calendarDate: '2019-10-09'
      endDate:
        calendarDate: '2021-03-28'

  $dataset$associatedParty
  $dataset$associatedParty[[1]]
  '@id': ~
  address: ~
  electronicMailAddress: ~
  individualName:
    givenName: ''
    surName: ~
  onlineUrl: https://inbo.be
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~


  $dataset$project
  $dataset$project$id
  NULL

  $dataset$project$title
  [1] "MICA - Muskrat and Coypu"

  $dataset$project$abstract
  $dataset$project$abstract$para
  [1] "This project is part of the LIFE project MICA, in which innovative techniques are tested for a more efficient control of muskrat and coypu populations, both invasive species. Camera traps were located in areas where the presence of muskrat and/or coypu was suspected."


  $dataset$project$designDescription
  $dataset$project$designDescription$description
  $dataset$project$designDescription$description$para
  This project uses a targeted sampling design. Animals are unmarked and camera traps are triggered with motion detection and time lapse. Media are classified at sequence level.



  $dataset$project$personnel
  '@id': ~
  address: ~
  electronicMailAddress: tim.adriaens@inbo.be
  individualName:
    givenName: Tim
    surName: Adriaens
  onlineUrl: .na.character
  organizationName: Research Institute for Nature and Forest (INBO)
  phone: ~
  positionName: ~
  userId: ~


  $dataset$pubDate
  [1] "2021-07-07"

  $dataset$alternateIdentifier
  [1] "https://doi.org/10.5281/zenodo.4893244"

Code
  eml_from_file
Output
  dataset:
    alternateIdentifier: https://doi.org/10.5281/zenodo.4893244
    title: mica title
    metadataProvider:
      individualName:
        givenName: Tim
        surName: Adriaens
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: tim.adriaens@inbo.be
    associatedParty:
      individualName:
        givenName: []
      organizationName: Research Institute for Nature and Forest (INBO)
      onlineUrl: https://inbo.be
    pubDate: '2021-07-07'
    abstract:
      para: <![CDATA[<span></span>This camera trap dataset is derived from the <a href="https://agouti.eu">Agouti</a>
        project <em>MICA - Muskrat and Coypu</em>. Data have been standardized to Darwin
        Core using the <a href="https://inbo.github.io/camtraptor/">camtraptor</a> R
        package and only include observations (and associated media) of animals. Excluded
        are records that document blank or unclassified media, vehicles and observations
        of humans. Geospatial coordinates are provided as is. The original dataset description
        follows.]]>
    keywordSet:
      keyword: camera traps
      keywordThesaurus: n/a
    coverage:
      geographicCoverage:
        boundingCoordinates:
          westBoundingCoordinate: '3.5176'
          eastBoundingCoordinate: '7.0243'
          northBoundingCoordinate: '53.2705'
          southBoundingCoordinate: '50.699'
      temporalCoverage:
        rangeOfDates:
          beginDate:
            calendarDate: '2019-10-09'
          endDate:
            calendarDate: '2021-03-28'
      taxonomicCoverage:
        taxonomicClassification:
        - taxonRankName: Species
          taxonRankValue: Anas platyrhynchos
        - taxonRankName: Species
          taxonRankValue: Anas strepera
        - taxonRankName: Species
          taxonRankValue: Ardea
        - taxonRankName: Species
          taxonRankValue: Ardea cinerea
        - taxonRankName: Species
          taxonRankValue: Castor fiber
        - taxonRankName: Species
          taxonRankValue: Homo sapiens
        - taxonRankName: Species
          taxonRankValue: Martes foina
        - taxonRankName: Species
          taxonRankValue: Mustela putorius
        - taxonRankName: Species
          taxonRankValue: Vulpes vulpes
    contact:
      individualName:
        givenName: Tim
        surName: Adriaens
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: tim.adriaens@inbo.be
    project:
      title: MICA - Muskrat and Coypu
      personnel:
        individualName:
          givenName: Tim
          surName: Adriaens
        organizationName: Research Institute for Nature and Forest (INBO)
        electronicMailAddress: tim.adriaens@inbo.be
      abstract:
        para: This project is part of the LIFE project MICA, in which innovative techniques
          are tested for a more efficient control of muskrat and coypu populations,
          both invasive species. Camera traps were located in areas where the presence
          of muskrat and/or coypu was suspected.
      designDescription:
        description:
          para: This project uses a targeted sampling design. Animals are unmarked and
            camera traps are triggered with motion detection and time lapse. Media are
            classified at sequence level.
    creator:
    - individualName:
        givenName: Tim
        surName: Adriaens
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: tim.adriaens@inbo.be
    - individualName:
        givenName: Emma
        surName: Cartuyvels
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: emma.cartuyvels@inbo.be
    - individualName:
        givenName: Jim
        surName: Casaer
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: jim.casaer@inbo.be
    - individualName:
        givenName: Abel
        surName: De Boer
      electronicMailAddress: adeboer@wetterskipfryslan.nl
    - individualName:
        givenName: Peter
        surName: Desmet
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: peter.desmet@inbo.be
      userId:
        directory: https://orcid.org/
        userId: 0000-0002-8442-8025
    - individualName:
        givenName: Dennis
        surName: Donckers
      electronicMailAddress: dennis.donckers2@telenet.be
    - individualName:
        givenName: Heiko
        surName: Fritz
      electronicMailAddress: foersterheiko@gmx.de
    - individualName:
        givenName: Lilja
        surName: Fromme
      electronicMailAddress: lilja.fromme@tiho-hannover.de
    - individualName:
        givenName: Friederike
        surName: Gethöffer
      electronicMailAddress: friederike.gethoeffer@tiho-hannover.de
    - individualName:
        givenName: Frank
        surName: Huysentruyt
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: frank.huysentruyt@inbo.be
    - individualName:
        givenName: Lydia
        surName: Liebgott
      electronicMailAddress: lydia.liebgott@tiho-hannover.de
    - individualName:
        givenName: Yorick
        surName: Liefting
      organizationName: Wageningen University
      electronicMailAddress: yorick.liefting@wur.nl
    - individualName:
        givenName: Jan
        surName: Lodewijkx
      electronicMailAddress: j.lodewijkx@vmm.be
    - individualName:
        givenName: Claudia
        surName: Maistrelli
      electronicMailAddress: claudia.maistrelli@tiho-hannover.de
    - individualName:
        givenName: Björn
        surName: Matthies
      electronicMailAddress: bjoern.matthies@lwk-niedersachsen.de
    - individualName:
        givenName: Axel
        surName: Neukermans
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: axel.neukermans@inbo.be
    - individualName:
        givenName: Brecht
        surName: Neukermans
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: brecht.neukermans@inbo.be
    - individualName:
        givenName: Kurt
        surName: Schamp
      electronicMailAddress: kurt.schamp@inbo.be
    - individualName:
        givenName: Dan
        surName: Slootmaekers
      electronicMailAddress: d.slootmaekers@vmm.be
    - individualName:
        givenName: Danny
        surName: Van der beeck
      electronicMailAddress: daniel.vanderbeeck@gmail.com
    - individualName:
        givenName: Yasmine
        surName: Verzelen
      organizationName: Research Institute for Nature and Forest (INBO)
      electronicMailAddress: yasmine.verzelen@inbo.be
  packageId: ~
  schemaLocation: https://eml.ecoinformatics.org/eml-2.2.0 https://eml.ecoinformatics.org/eml-2.2.0/eml.xsd
  system: uuid


inbo/camtraptor documentation built on June 2, 2025, 5:17 a.m.

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