| antisense | antisense |
| caption | caption |
| cls | cls |
| dreamroc | dreamroc |
| getmatches | getmatches |
| getRefSeq | getRefSeq |
| GetTolColors | Paul Tol's Color Schemes |
| groupdiff | groupdiff |
| iupac2regex | iupac2regex |
| lf | lf |
| libs | libs |
| list2matrix | list2matrix |
| list2table | list2table |
| logttest | logttest |
| LSDize | LSDize |
| LSDize.preview | LSDize.preview |
| mapsequence | mapsequence |
| peptize | peptize |
| pheat.colors | pheat.colors |
| plapply | plapply |
| plot_pr | plot_pr |
| plot.Tol | Plot function for 'Tol' color palette |
| ppbar-class | ppbar |
| psapply | psapply |
| rc | rc |
| read | read |
| read.fasta | read.fasta |
| rg.colors | rg.colors |
| roc | DEPRECATED Create Points for a ROC-Curve. The result is an... |
| showxls | showxls |
| strcompare | strcompare |
| sunbeam | SUNBEAM |
| translate_allframes | translate_allframes |
| ucsc | ucsc |
| write.fasta | write.fasta |
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