bru_get_mapper: Extract mapper information from INLA model component objects

View source: R/effect.R

bru_get_mapperR Documentation

Extract mapper information from INLA model component objects

Description

The component definitions will automatically attempt to extract mapper information from any model object by calling the generic bru_get_mapper. Any class method implementation should return a bru_mapper object suitable for the given latent model.

Usage

bru_get_mapper(model, ...)

## S3 method for class 'inla.spde'
bru_get_mapper(model, ...)

## S3 method for class 'inla.rgeneric'
bru_get_mapper(model, ...)

bru_get_mapper_safely(model, ...)

Arguments

model

A model component object

...

Arguments passed on to other methods

Value

A bru_mapper object defined by the model component

Methods (by class)

  • bru_get_mapper(inla.spde): Extract an indexed mapper for the model$mesh object contained in the model object, which is assumed to be of a class supporting relevant fmesher methods.

  • bru_get_mapper(inla.rgeneric): Returns the mapper given by a call to model$f$rgeneric$definition("mapper"). To support this for your own inla.rgeneric models, add a "mapper" option to the cmd argument of your rgeneric definition function. You will need to store the mapper in your object as well. Alternative, define your model using a subclass and define a corresponding bru_get_mapper.subclass method that should return the corresponding bru_mapper object.

Functions

  • bru_get_mapper_safely(): Tries to call the bru_get_mapper, and returns NULL if it fails (e.g. due to no available class method). If the call succeeds and returns non-NULL, it checks that the object inherits from the bru_mapper class, and gives an error if it does not.

See Also

bru_mapper for mapper constructor methods, and the individual mappers for specific implementation details.

Other mappers: bm_aggregate(), bm_collect(), bm_const(), bm_factor(), bm_fmesher(), bm_harmonics(), bm_index(), bm_linear(), bm_logsumexp(), bm_marginal(), bm_matrix(), bm_mesh_B(), bm_multi(), bm_pipe(), bm_repeat(), bm_scale(), bm_shift(), bm_sum(), bm_taylor(), bru_mapper(), bru_mapper.fm_mesh_1d(), bru_mapper.fm_mesh_2d(), bru_mapper_generics

Examples

if (bru_safe_inla()) {
  library(INLA)
  mesh <- fmesher::fm_rcdt_2d_inla(globe = 2)
  spde <- inla.spde2.pcmatern(mesh,
    prior.range = c(1, 0.5),
    prior.sigma = c(1, 0.5)
  )
  mapper <- bru_get_mapper(spde)
  ibm_n(mapper)
}

inlabru-org/inlabru documentation built on July 17, 2025, 2:11 a.m.