bru_get_mapper: Extract mapper information from INLA model component objects

In inlabru-org/inlabru: Bayesian Latent Gaussian Modelling using INLA and Extensions

Extract mapper information from INLA model component objects

Description

The component definitions will automatically attempt to extract mapper information from any model object by calling the generic bru_get_mapper. Any class method implementation should return a bru_mapper object suitable for the given latent model.

Usage

bru_get_mapper(model, ...)

## S3 method for class 'inla.spde'
bru_get_mapper(model, ...)

## S3 method for class 'inla.rgeneric'
bru_get_mapper(model, ...)

bru_get_mapper_safely(model, ...)

Arguments

model	A model component object
...	Arguments passed on to other methods

Details

• bru_get_mapper.inla.spde extract an indexed mapper for the model$mesh object contained in the model object. It returns NULL gives a warning if no known mesh type is found in the model object.

• bru_get_mapper.inla.rgeneric returns the mapper given by a call to model$f$rgeneric$definition("mapper"). To support this for your own inla.rgeneric models, add a "mapper" option to the cmd argument of your rgeneric definition function. You will need to store the mapper in your object as well. Alternative, define your model using a subclass and define a corresponding bru_get_mapper.subclass method that should return the corresponding bru_mapper object.

• bru_get_mapper_safely tries to call the bru_get_mapper, and returns NULL if it fails (e.g. due to no available class method). If the call succeeds and returns non-NULL, it checks that the object inherits from the bru_mapper class, and gives an error if it does not.

Value

A bru_mapper object defined by the model component

See Also

bru_mapper for mapper constructor methods, and the individual mappers for specific implementation details.

Other mappers: bru_mapper(), bru_mapper.fm_mesh_1d(), bru_mapper.fm_mesh_2d(), bru_mapper_aggregate(), bru_mapper_collect(), bru_mapper_const(), bru_mapper_factor(), bru_mapper_generics, bru_mapper_harmonics(), bru_mapper_index(), bru_mapper_linear(), bru_mapper_logsumexp(), bru_mapper_marginal(), bru_mapper_matrix(), bru_mapper_mesh_B(), bru_mapper_multi(), bru_mapper_pipe(), bru_mapper_scale(), bru_mapper_shift(), bru_mapper_taylor()

Examples

if (bru_safe_inla(quietly = TRUE)) {
  library(INLA)
  mesh <- fmesher::fm_rcdt_2d_inla(globe = 2)
  spde <- inla.spde2.pcmatern(mesh,
    prior.range = c(1, 0.5),
    prior.sigma = c(1, 0.5)
  )
  mapper <- bru_get_mapper(spde)
  ibm_n(mapper)
}

inlabru-org/inlabru documentation built on April 25, 2024, 2:43 p.m.