innager/dcifer: Genetic Relatedness Between Polyclonal Infections
An implementation of Dcifer (Distance for complex infections: fast estimation of relatedness), an identity by descent (IBD) based method to calculate genetic relatedness between polyclonal infections from biallelic and multiallelic data. The package includes functions that format and preprocess the data, implement the method, and visualize the results. Gerlovina et al. (2022) <doi:10.1093/genetics/iyac126>.
Getting started
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Package details |
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| Maintainer | Inna Gerlovina <innager@berkeley.edu> |
| License | MIT + file LICENSE |
| Version | 1.3.0 |
| URL | https://github.com/EPPIcenter/dcifer https://eppicenter.github.io/dcifer/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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