getCOI: Calculate COI
In innager/dcifer: Genetic Relatedness Between Polyclonal Infections
getCOI R Documentation
Calculate COI
Description
Calculates complexity of infection for a list of samples, using the number of
detected alleles.
Usage
getCOI(dsmp, lrank = 2)
Arguments
dsmp
a list with each element corresponding to one sample.
lrank
the rank of the locus that will determine a sample's COI (loci
are ranked by the number of detected alleles).
Value
a vector with estimated COI for each sample.
Examples
coi <- getCOI(dsmp, lrank = 2)
innager/dcifer documentation built on May 21, 2024, 1:23 a.m.
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| getCOI | R Documentation |
Calculate COI
Description
Calculates complexity of infection for a list of samples, using the number of detected alleles.
Usage
getCOI(dsmp, lrank = 2)
Arguments
dsmp |
a list with each element corresponding to one sample. |
lrank |
the rank of the locus that will determine a sample's COI (loci are ranked by the number of detected alleles). |
Value
a vector with estimated COI for each sample.
Examples
coi <- getCOI(dsmp, lrank = 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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