getMainEffects: 'getMainEffects' Wrapper for fitMainEffectModel with sapply...

In insilico/glmSTIR: Nearest-neighbor Projected-Distance Regression

getMainEffects Wrapper for fitMainEffectModel with sapply over independent variable names. Does not include covariates, so if you have covariates use indVarNames = colnames(dats)[1:(ncol(dats) - nCovs - 1)] if the columns are organized as: independent vars, covars, pheno

Description

getMainEffects Wrapper for fitMainEffectModel with sapply over independent variable names. Does not include covariates, so if you have covariates use indVarNames = colnames(dats)[1:(ncol(dats) - nCovs - 1)] if the columns are organized as: independent vars, covars, pheno

Usage

getMainEffects(
  dats,
  indVarNames = NULL,
  depVarName = NULL,
  reg.fam = "binomial",
  nCovs = 0
)

Arguments

dats	data.frame with variables in columns and samples in rows.
indVarNames	vector of independent variable names to loop over.
depVarName	string name of the classLabel variable.
nCovs	numeric of included covariates.
regressionFamily	string glm regression family name.

Value

mainEffectValues vector of main effect values.

insilico/glmSTIR documentation built on July 7, 2023, 12:29 a.m.