ReadFastPHASE: Read fastPHASE files
In inzilico/imputeqc: A Quality Control for Genotype Imputation
Description
Usage
Arguments
Value
Description
Parses fastPHASE *.inp files. There are two types of them: with ids of samples
provided or not. The function recognizes both. The alleles can be coded as
letters or numbers, but missing ones should be always "?". Check that alleles
in input file are written without whitespaces. The haplotype should look like
'AACTT' and not like 'A A C T T'.
Usage
1
ReadFastPHASE(inp)
Arguments
inp
path/to/filename.inp
Value
A character vector with strings of letters representing haplotypes.
The length of vector is 2N, where N is the number of diploid individuals.
inzilico/imputeqc documentation built on July 28, 2020, 5:31 p.m.
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Description Usage Arguments Value
Description
Parses fastPHASE *.inp files. There are two types of them: with ids of samples provided or not. The function recognizes both. The alleles can be coded as letters or numbers, but missing ones should be always "?". Check that alleles in input file are written without whitespaces. The haplotype should look like 'AACTT' and not like 'A A C T T'.
Usage
1 | ReadFastPHASE(inp)
|
Arguments
inp |
path/to/filename.inp |
Value
A character vector with strings of letters representing haplotypes. The length of vector is 2N, where N is the number of diploid individuals.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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