Man pages for ipb-halle/MetFamily
MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies

add_qfeaturesAdd qfeatures to dataList
addSiriusAnnotationsAdd Sirius Annotations
calcPlotDendrogramPrepare dendrogram plot
calcPlotDendrogram_plotlyPrepare Dendrogram for Plotly
calcPlotHeatmapPlot Heatmap
calcPlotHeatmapLegendPrep Heatmap Legend
calcPlotMS2MS2 Plot
calcPlotMS2LegendMS2 plot legend
calcPlotPCAloadingscalcPlotPCAloadings
calcPlotPCAscoresPCA plot
calculatePCACalculate PCA
castListEntriesCast logical's and numeric's in a list or data.frame
colorPaletteScoresColors
convertToProjectFileConvert to Project File
data.numericmatrixConvert data.frame columns to numeric
filterDataFilter a dataList
getAvailableClassifiersClassifiers
load_metfamily_dependenciesRun library for all packages
metaboliteFamilyVersusClassTitle
MetFamily-packageMetFamily: MetFamily: Discovering Regulated Metabolite...
mzClustGenericAlignment of high resolution mass spectra
parseMSP_attributesparseMSP_attributes
parsePeakAbundanceMatrixQFTitle
performPcaRun PCA
pipePipe operator
processMS1dataProcess MS-Dial-like MS1 data.frame
readClusterDataFromProjectFileRead MetFamily Project data saved by the export function
readMetaboscapeRead Metaboscape Output File into a QFeatures Object
readMSDialRead MS-DIAL Output File into a QFeatures Object
readProjectDataRead MetFamily Project data saved by the export function
reexportsObjects exported from other packages
runMetFamilyStart the web app in browser
sparseMatrixToStringFlatten listObject to string for export
swap_names_and_valuesSwap a vector's names and values
ipb-halle/MetFamily documentation built on April 5, 2025, 5:05 p.m.