plot_lasagna_1subject: Lasagna plot of glucose values for 1 subject aligned across...

In irinagain/iglu: Interpreting Glucose Data from Continuous Glucose Monitors

Lasagna plot of glucose values for 1 subject aligned across times of day

Description

Lasagna plot of glucose values for 1 subject aligned across times of day

Usage

plot_lasagna_1subject(
  data,
  lasagnatype = c("unsorted", "timesorted", "daysorted"),
  limits = c(50, 500),
  midpoint = 105,
  LLTR = 70,
  ULTR = 180,
  dt0 = NULL,
  inter_gap = 45,
  tz = "",
  color_scheme = c("blue-red", "red-orange"),
  log = F
)

Arguments

data	DataFrame object with column names "id", "time", and "gl".
lasagnatype	String corresponding to plot type, currently supported options are 'unsorted' for an unsorted single-subject lasagna plot, 'timesorted' for a lasagna plot with glucose values sorted within each time point across days, and 'daysorted' for a lasagna plot with glucose values sorted within each day across time points.
limits	The minimal and maximal glucose values for coloring grid which is gradient from blue (minimal) to red (maximal), see scale_fill_gradient2)
midpoint	The glucose value serving as midpoint of the diverging gradient scale (see scale_fill_gradient2). The default value is 105 mg/dL. The values above are colored in red, and below in blue in the default color_scheme, which can be adjusted.
LLTR	Lower Limit of Target Range, default value is 70 mg/dL.
ULTR	Upper Limit of Target Range, default value is 180 mg/dL.
dt0	The time frequency for interpolated aligned grid in minutes, the default will match the CGM meter's frequency (e.g. 5 min for Dexcom).
inter_gap	The maximum allowable gap (in minutes) for interpolation of NA glucose values. The values will not be interpolated between the glucose measurements that are more than inter_gap minutes apart. The default value is 45 min.
tz	A character string specifying the time zone to be used. System-specific (see as.POSIXct), but " " is the current time zone, and "GMT" is UTC (Universal Time, Coordinated). Invalid values are most commonly treated as UTC, on some platforms with a warning.
color_scheme	String corresponding to the chosen color scheme. By default, 'blue-red' scheme is used, with the values below ‘LLTR' colored in shades of blue, and values above 'ULTR' colored in shades of red. The alternative ’red-orange' scheme mimics AGP output from agp with low values colored in red, in-range values colored in green, and high values colored in yellow and orange.
log	Logical value indicating whether log of glucose values should be taken, default values is FALSE. When log = TRUE the glucose values, limits, midpoint, LLTR, and ULTR will all be log transformed.

Value

A ggplot object corresponding to lasagna plot

References

Swihart et al. (2010) Lasagna Plots: A Saucy Alternative to Spaghetti Plots, Epidemiology 21(5), 621-625, \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1097/EDE.0b013e3181e5b06a")}

Examples

plot_lasagna_1subject(example_data_1_subject)
plot_lasagna_1subject(example_data_1_subject, color_scheme = 'red-orange')
plot_lasagna_1subject(example_data_1_subject, lasagnatype = 'timesorted')
plot_lasagna_1subject(example_data_1_subject, lasagnatype = 'daysorted')
plot_lasagna_1subject(example_data_1_subject, log = TRUE)

irinagain/iglu documentation built on April 15, 2024, 4:20 p.m.