README.md

In isabelfulcher/frontdoorpiie: Population Intervention Indirect Effect estimation

frontdoorpiie

A package for estimation and inference of the Population Intervention Indirect Effect (PIIE) using the four estimators described in Fulcher et al. (2017).

Installation

devtools::install_github("isabelfulcher/frontdoorpiie")

Description

This package only contains one function piieffect. This function provides estimation and inference of the Population Intervention Indirect Effect (PIIE). The PIIE can be interpreted as the contrast that relates the marginal outcome of the target population to the outcome mean had contrary to fact had the intermediate variable taken its corresponding value in the absence of exposure. The output for the function returns estimates, standard errors, and a 95\% Wald-type confidence interval for each of the four estimators described in Fulcher et al. (2017):

Data format

Data

A dataframe containing the outcome, exposure, intermediate, and all covariates should be created. All of these variables should be numeric. The column names for each of these variables is necessary for the function.

Outcome model

The outcome variable Y must be a continuous variable as it will be modeled with linear regression using the lm() function:

If an interaction term is not needed, the argument should be interaction=0. Additonally, the argument for the covariates in the outcome model should be specified in covariates.outcome=c("covariate_1","covariate_2"). If no covariates are needed, then this argument can be left blank or covariates.outcome=0 can be used. No interaction terms between the exposure or intermediate and covariates are currently allowed. If interaction terms are desired between covariates, this should be created outside of the function (see example).

Intermediate model

The intermediate variable Z must be a continuous variable as it will be modeled with linear regression using the lm() function:

The argument for the covariates in the intermediate model should be specified in covariates.intermediate=c("covariate_1","covariate_2"). If no covariates are needed, then this argument can be left blank or covariates.intermediate=0 can be used. No interaction terms between the exposure and covariates are currently allowed. If interaction terms are desired between covariates, this should be created outside of the function (see example).

Exposure model

The exposure variable A must be a binary variable as it will be modeled with logistic regression using the glm() function:

The argument for the covariates in the exposure model should be specified in covariates.exposure=c("covariate_1","covariate_2"). If no covariates are needed, then this argument can be left blank or covariates.exposure=0 can be used. If interaction terms are desired between covariates, this should be created outside of the function (see example).

An example

Load example dataset

simdata <- readRDS(system.file("rds","simdata1.rds",package="frontdoorpiie"))

View example dataset

```{r,echo=TRUE} head(simdata)

### Create an interaction term between covariate 1 and covariate 2 
```r
simdata$c1c2 <- simdata$c1*simdata$c2

Apply piieffect function to estimate PIIE

{r,echo=TRUE} piieffect(data=simdata,outcome="y",intermediate="m",exposure="a", covariates.outcome=c("c1","c2","c1c2"),covariates.intermediate=c("c1","c2","c1c2"),covariates.exposure=c("c1","c2","c1c2"), interaction=1,astar=0)

isabelfulcher/frontdoorpiie documentation built on May 28, 2019, 9:56 p.m.