predictEDY: EDY prediction
In isglobal-brge/EDY: Analysis of extreme downregulation of chromosome Y (EDY)
Description
Usage
Arguments
Details
Value
Description
Prediction of Extreme Downregulation of chromosome Y (EDY)
from methylation data
Usage
1
predictEDY(x, ...)
Arguments
x
An ExpressionSet or a matrix with CpGs in rows, samples in columns and
CpG names in the rowname or a data.frame with individuals/samples in
columns, being the first column the CpG name.
Details
Predicts individuals' EDY status using an Elastic Net Model with parameters
alpha=0.2 and lambda=0.02403319.It is trained and tested with
data from the TCGA.
Value
A vector with EDY status (No, Yes) or, in case 'x' is an
ExpressionSet, the same ExpressionSet with a new column in pData
named edy.pred which contains the EDY status prediction.
isglobal-brge/EDY documentation built on Jan. 24, 2020, 3:21 a.m.
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Description Usage Arguments Details Value
Description
Prediction of Extreme Downregulation of chromosome Y (EDY) from methylation data
Usage
1 | predictEDY(x, ...)
|
Arguments
x |
An ExpressionSet or a matrix with CpGs in rows, samples in columns and CpG names in the rowname or a data.frame with individuals/samples in columns, being the first column the CpG name. |
Details
Predicts individuals' EDY status using an Elastic Net Model with parameters alpha=0.2 and lambda=0.02403319.It is trained and tested with data from the TCGA.
Value
A vector with EDY status (No, Yes) or, in case 'x' is an
ExpressionSet, the same ExpressionSet with a new column in pData
named edy.pred which contains the EDY status prediction.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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