mantelcorGroup: Mantel test on different groups

In isglobal-brge/co_splicing: Package to perform cosplicing data analysis

Description

The function uses getDataGroup function to perform mantel test on data from individuals that belongs to the same group.

Usage

mantelcorGroup(g1, g2, batchmat, group)

Arguments

g1	The distance data vector for a particular gene.
g2	The distance data vector for another gene.
batchmat	The distance data vector containing the corrections due to experiment conditions. The length of g1, g2 and batchmat must be the same.
group	A factor with the group to which belongs each individual in the same order as they are on the matrix from which the three first arguments belong. The function is performed so that the number of groups be 3 and the levels of group be "AA", "AB" & "BB" in this order.

Value

The function calculate the differences in mantel correlation value from each pair of groups and returns the maximum value between the absolute value of these differences.

isglobal-brge/co_splicing documentation built on May 18, 2019, 5:50 a.m.