invClust-Internal: Internal functions of 'invClust'

Description Usage Arguments See Also

Description

Internal functions and Expectation Maximization routines not intended for user use.

Usage

1
2
EM(y, mu10, mu20, sigma0, p0, q0, x, muGroup0, sigmaGroup0, piGroup0, tol = 10^(-5), it = 1000)
EM1D(y, mu10, mu20, sigma0, p0, q0, x, muGroup0, sigmaGroup0, piGroup0, tol = 10^(-5), it = 1000)

Arguments

y

MDS compoents

mu10

initial condition for mean of first homozygous group

mu20

initial condition for mean of second homozygous group

sigma0

initial condition for covariant matrix between MDS components

p0

initial condition for first haplotype allele

q0

initial condition for second haplotype allele

x

first genome-wide PCA component

muGroup0

initial condition for geographical subpopulation groups

sigmaGroup0

initial condition for standard deviation of groups

piGroup0

initial condition for probability of belonging to each group

tol

tolerace of convergence

it

maxium number of iterations

See Also

invClust


isglobal-brge/invClust documentation built on May 27, 2019, 8:45 a.m.