invClust-Internal: Internal functions of 'invClust'

In isglobal-brge/invClust: inference of invarsion alleles from biallelic haplotype clustering

Description

Internal functions and Expectation Maximization routines not intended for user use.

Usage

EM(y, mu10, mu20, sigma0, p0, q0, x, muGroup0, sigmaGroup0, piGroup0, tol = 10^(-5), it = 1000)
EM1D(y, mu10, mu20, sigma0, p0, q0, x, muGroup0, sigmaGroup0, piGroup0, tol = 10^(-5), it = 1000)

Arguments

y	MDS compoents
mu10	initial condition for mean of first homozygous group
mu20	initial condition for mean of second homozygous group
sigma0	initial condition for covariant matrix between MDS components
p0	initial condition for first haplotype allele
q0	initial condition for second haplotype allele
x	first genome-wide PCA component
muGroup0	initial condition for geographical subpopulation groups
sigmaGroup0	initial condition for standard deviation of groups
piGroup0	initial condition for probability of belonging to each group
tol	tolerace of convergence
it	maxium number of iterations

See Also

invClust

isglobal-brge/invClust documentation built on May 19, 2020, 5:19 a.m.