Files in isglobal-brge/madloy_v1
Package to detect mosaic LOY from SNP array data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/MADloy.R
R/MADloyHapMapAll.R
R/MADloyHapMapMale.R
R/checkSex.R
R/getSummary.R
R/plot.MADloy.R
R/plot.checkSex.R
R/plotIndLRR.R
R/plotIndSNP.R
R/print.MADloy.R
R/print.checkSex.R
R/processMAD.R
R/utils.R
README.md
data-raw/HapMap_SNP_Data_2.R
data/GRCh38.chrom.sizes
data/GRCh38.par.regions
data/MADloyDataAll.rda
data/MADloyDataMale.rda
data/hg18.chrom.sizes
data/hg18.par.regions
data/hg19.chrom.sizes
data/hg19.par.regions
inst/extdata/rawData/Sample1.txt
inst/extdata/rawData/Sample2.txt
inst/extdata/rawData/Sample3.txt
madloy_v1.Rproj
man/MADloyHapMapAll.Rd
man/MADloyHapMapMale.Rd
man/checkSex.Rd
man/getSummary.Rd
man/madloy.Rd
man/plot.MADloy.Rd
man/plotIndLRR.Rd
man/plotIndSNP.Rd
man/processMAD.Rd
vignettes/MADloy_SNParray_vignette.Rmd
vignettes/MADloy_SNParray_vignette.html
vignettes/MADloy_SNParray_vignette_files/figure-html/plotSample1-1.png
vignettes/MADloy_SNParray_vignette_files/figure-html/plotSample1_LRR-1.png
vignettes/MADloy_SNParray_vignette_files/figure-html/plotSample2-1.png
vignettes/MADloy_SNParray_vignette_files/figure-html/plotSample2-2.png
vignettes/MADloy_SNParray_vignette_files/figure-html/plot_sex-1.png
vignettes/MADloy_SNParray_vignette_files/figure-html/unnamed-chunk-3-1.png
vignettes/MADloy_SNParray_vignette_files/figure-html/unnamed-chunk-4-1.png
vignettes/MADloy_SNParray_vignette_files/figure-latex/plotSample1_LRR-1.pdf
vignettes/MADloy_SNParray_vignette_files/figure-latex/plotSample2-1.pdf
vignettes/MADloy_SNParray_vignette_files/figure-latex/plotSample2-2.pdf
vignettes/MADloy_SNParray_vignette_files/figure-latex/plot_sex-1.pdf
vignettes/MADloy_SNParray_vignette_files/figure-latex/unnamed-chunk-3-1.pdf
