EnrichResult-class: Class 'EnrichResult'

In isglobal-brge/postRexposome: Package to enrich exposome-omic data analyis results.

Description

Class EnrichResult

Function to create a ResultSet from scratch

This function allows to combine multiple ResultSet objects in a single one.

Usage

EnrichSet(fun_originA, fun_originB, search, database, eresult)

join(...)

Arguments

fun_originA	Function used to create the ResultSet (aka. enirchDIS, ...).
fun_originB	(optional) Function used to create the base object of the new ResultSet. Usually rexposome's functions (aka. assocGE, ...).
search	character used in the database query.
database	character indicating the databased used.
eresult	list with a single element, the result obtained from the query.
...	Two or more object of class EnrichResult

Functions

• EnrichSet:

• join:

Slots

fun_origin

list containing the methods used to create the EnrichResult object/s.

search

list containing the features used to query the web databses and to create EnrichResult object/s.

database

list containing the database queried to create EnrichResult object/s.

eresult

list containing the results obtained on quering web databases

Examples

data(air)
no2 <- enrichDIS(air, rid="NO2", sel.pval="P.Value", warnings=FALSE,
                 sel.feature="gene_assignment", translate.from="REFSEQ")
ben <- enrichDIS(air, rid="Ben", sel.pval="P.Value", warnings=FALSE,
                 sel.feature="gene_assignment", translate.from="REFSEQ")
join(no2, ben)

isglobal-brge/postRexposome documentation built on May 18, 2019, 5:50 a.m.