orbi_plot_shot_noise: Make a shot noise plot

In isoverse/isoorbi: Process Orbitrap Isotopocule Data

Make a shot noise plot

Description

This function creates a shot noise plot using a shotnoise data frame created by the orbi_analyze_shot_noise() function.

Usage

orbi_plot_shot_noise(
  shotnoise,
  x = c("time.min", "n_effective_ions"),
  permil_target = NA_real_,
  color = "ratio_label",
  colors = c("#1B9E77", "#D95F02", "#7570B3", "#E7298A", "#66A61E", "#E6AB02", "#A6761D",
    "#666666")
)

Arguments

shotnoise	a shotnoise data frame
x	x-axis for the shot noise plot, either "time.min" or "n_effective_ions"
permil_target	highlight the target permil in the shotnoise plot
color	which column to use for the color aesthetic (must be a factor)
colors	which colors to use, by default a color-blind friendly color palettes (RColorBrewer, dark2)

Details

plot shot noise

Value

a ggplot object

isoverse/isoorbi documentation built on Aug. 9, 2024, 3:42 p.m.