Files in ivanek/Gviz
Plotting data and annotation information along genomic coordinates
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
CITATION.cff
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/AlignmentsTrack-class.R
R/AnnotationTrack-class.R
R/BiomartGeneRegionTrack-class.R
R/CustomTrack-class.R
R/DataTrack-class.R
R/DisplayPars-class.R
R/GdObject-class.R
R/GeneRegionTrack-class.R
R/GenomeAxisTrack-class.R
R/Gviz-defunct.R
R/Gviz-deprecated.R
R/HighlightTrack-class.R
R/IdeogramTrack-class.R
R/ImageMap-class.R
R/NumericTrack-class.R
R/OverlayTrack-class.R
R/RangeTrack-class.R
R/ReferenceTrack-class.R
R/SequenceTrack-class.R
R/StackedTrack-class.R
R/UcscTrack.R
R/collapsing.R
R/datasets.R
R/exportTracks.R
R/grouping.R
R/plotTracks.R
R/settings.R
R/utils.R
README.md
TODO
data/alTrackGenes.rda
data/biomTrack.rda
data/biomTrack2.rda
data/bmTrack.rda
data/collapseTrack.rda
data/cpgIslands.rda
data/cyp2b10.rda
data/denseAnnTrack.rda
data/dtHoriz.rda
data/geneDetails.rda
data/geneModels.rda
data/idTrack.rda
data/ideoTrack.rda
data/itrack.rda
data/twoGroups.rda
data/ucscItems.rda
inst/CITATION
inst/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam
inst/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam.bai
inst/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam
inst/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam.bai
inst/extdata/biomartVersionsLatest.txt
inst/extdata/biomartVersionsNow.txt
inst/extdata/gapped.bam
inst/extdata/gapped.bam.bai
inst/extdata/indels.bam
inst/extdata/indels.bam.bai
inst/extdata/snps.bam
inst/extdata/snps.bam.bai
inst/extdata/test.2bit
inst/extdata/test.bam
inst/extdata/test.bam.bai
inst/extdata/test.bed
inst/extdata/test.bedGraph
inst/extdata/test.bw
inst/extdata/test.fa
inst/extdata/test.fa.fai
inst/extdata/test.gff
inst/extdata/test.gff1
inst/extdata/test.gff2
inst/extdata/test.gff3
inst/extdata/test.gtf
inst/extdata/test.wig
inst/scripts/documentation.R
inst/scripts/testBiomartGenomeMappings.R
inst/scripts/updateBiomartGenomeMappings.R
man-roxygen/AlignmentsTrack-class_param.R
man-roxygen/AnnotationTrack_param.R
man-roxygen/AnnotationTrack_slot.R
man-roxygen/BiomartGeneRegionTrack-class_param.R
man-roxygen/CustomTrack-class_param.R
man-roxygen/DataTrack-class_param.R
man-roxygen/DisplayParams_list.R
man-roxygen/DisplayParams_param.R
man-roxygen/DisplayParams_param_old.R
man-roxygen/GdObject-class_param.R
man-roxygen/GdObject-class_slot.R
man-roxygen/GeneRegionTrack-class_param.R
man-roxygen/GenomeAxisTrack-class_param.R
man-roxygen/HighlightTrack-class_param.R
man-roxygen/ImageMap-class_param.R
man-roxygen/ImageMap-class_slot.R
man-roxygen/NumericTrack_param.R
man-roxygen/OverlayTrack-class_param.R
man-roxygen/RangeTrack-class_param.R
man-roxygen/RangeTrack-class_slot.R
man-roxygen/ReferenceTrack-class_param.R
man-roxygen/SequenceTrack-class_param.R
man-roxygen/StackedTrack_param.R
man-roxygen/StackedTrack_slot.R
man/AlignmentsTrack-class.Rd
man/AnnotationTrack-class.Rd
man/BiomartGeneRegionTrack-class.Rd
man/CustomTrack-class.Rd
man/DataTrack-class.Rd
man/DisplayPars-class.Rd
man/GdObject-class.Rd
man/GeneRegionTrack-class.Rd
man/GenomeAxisTrack-class.Rd
man/Gviz-defunct.Rd
man/Gviz-deprecated.Rd
man/HighlightTrack-class.Rd
man/IdeogramTrack-class.Rd
man/ImageMap-class.Rd
man/NumericTrack-class.Rd
man/OverlayTrack-class.Rd
man/RangeTrack-class.Rd
man/ReferenceTrack-class.Rd
man/SequenceTrack-class.Rd
man/StackedTrack-class.Rd
man/UcscTrack.Rd
man/collapsing.Rd
man/datasets.Rd
man/exportTracks.Rd
man/grouping.Rd
man/plotTracks.Rd
man/settings.Rd
tests/testthat.R
tests/testthat/setup.R
tests/testthat/teardown.R
tests/testthat/test_AllClasses.R
tests/testthat/test_AllGenerics.R
tests/testthat/test_Gviz-methods.R
tests/testthat/test_Gviz.R
vignettes/Gviz-example.png
vignettes/Gviz-logo.pdf
vignettes/Gviz-logo.png
vignettes/Gviz-refs.bib
vignettes/Gviz.Rmd
vignettes/ucsc1.png
vignettes/ucsc2.png
