Files in jBernardADFG/ChenaSalchaSR

Chena Salcha State-Space Spawner-Recruit Analysis

Main/2020-main.R R/age_hists.R R/base.R R/base_ar.R R/base_tvm.R R/base_tvm_ar.R R/base_tvm_ar_tvp.R R/clean_chains.R R/extract_abundance_by_age.R R/extract_abundance_estimates.R R/extract_age_at_maturity.R R/extract_sr_params.R R/format.R R/get_initial_values.R R/get_jags_data.R R/get_new_inits.R R/get_params.R R/horsetail_plot.R R/profile_plot.R R/residuals.R R/save_jags_model.R R/save_run_info.R R/set_model_specifications.R R/source_directory.R R/sustainable_yield.R R/trace_params.R Rfolder/etc/clean_chains.R Rfolder/etc/get_initial_values.R Rfolder/etc/get_new_inits.R Rfolder/etc/get_params.R Rfolder/etc/get_sr_params_tvp.R Rfolder/etc/set_model_specifications.R Rfolder/etc/trace_params.R Rfolder/get_jags_data/format.R Rfolder/get_jags_data/get_jags_data.R Rfolder/jags/base.R Rfolder/jags/base_ar.R Rfolder/jags/base_ld.R Rfolder/jags/base_tvm.R Rfolder/jags/base_tvm_ar.R Rfolder/jags/base_tvm_ar_ash.R Rfolder/jags/base_tvm_ar_ash_2.R Rfolder/jags/base_tvm_ar_tvp.R Rfolder/jags/base_tvm_tvp.R Rfolder/jags/base_tvp.R Rfolder/jags/base_tvp_ld.R Rfolder/jags/getting_closer.R Rfolder/jags/save_jags_model.R Rfolder/jags/temp.R Rfolder/jordy_sr/jordy_sr.R Rfolder/plots/age_hists.R Rfolder/plots/horsetail_plot.R Rfolder/plots/profile_plot.R Rfolder/plots/residuals.R Rfolder/plots/sustainable_yield.R Rfolder/tables/extract_abundance_by_age.R Rfolder/tables/extract_abundance_estimates.R Rfolder/tables/extract_age_at_maturity.R Rfolder/tables/extract_sr_params.R Rfolder/tables/get_sr_params_tvp.R Rfolder/tables/save_run_info.R Rplots.pdf man/age_hist.Rd man/clean_chains.Rd man/extract_abundance_by_age.Rd man/extract_abundance_estimates.Rd man/extract_age_at_maturity.Rd man/extract_sr_params.Rd man/format.paired.Rd man/format.standalone.Rd man/get_initial_values.Rd man/get_jags_data.Rd man/get_new_inits.Rd man/get_params.Rd man/horsetail_plot.Rd man/profile_plot.Rd man/residual_plot.Rd man/save_jags_model.Rd man/save_run_info.Rd man/set_model_specifications.Rd man/source_directory.Rd man/sy_plot.Rd man/trace_params.Rd man/write_jags_model.base.Rd man/write_jags_model.base_ar.Rd man/write_jags_model.base_tvm.Rd man/write_jags_model.base_tvm_ar.Rd man/write_jags_model.base_tvm_ar_tvp.Rd