.github/ISSUE_TEMPLATE/error-encountered.md

In jackbibby1/SCPA: Single Cell Pathway Analysis

name: Error encountered about: Any errors whilst running SCPA title: '' labels: '' assignees: ''

The specific error you're running into Either copy/paste the error message, or provide a screenshot

To Reproduce The code to reproduce the error e.g.

library(SCPA); library(Seurat); library(msigdbr)

p1 <- seurat_extract(df, meta1 = "hour", value_meta1 = "0")
p2 <- seurat_extract(df, meta1 = "hour", value_meta1 = "24")

pathways <- msigdbr("Homo sapiens", "H") %>% format_pathways()

scpa_out <- compare_pathways(list(p1, p2), pathways)

Expected behavior A clear and concise description of what you expected to happen.

Screenshots If applicable, add screenshots to help explain your problem.

Additional context Add any other context about the problem here.

jackbibby1/SCPA documentation built on May 14, 2024, 7:16 a.m.