An R package and associated scripts for visualisation splicing quantitative trait loci (sQTLs).
If you use sQTLviztools in your work, please cite the following two papers: - https://www.nature.com/articles/s41588-018-0238-1 - https://www.nature.com/articles/s41467-019-08912-9
git clone https://github.com/jackhump/sqtlviztools.git
in R:
install.packages("remotes")
remotes::install_github("jackhump/sQTLviztools")
I picked a SNP / intron cluster pair at random from the ROSMAP shiny app - https://rajlab.shinyapps.io/sQTLviz_ROSMAP/
In the examples folder there is a toy version of each file you'll need to visualise sQTLs.
on the command line:
cd sqtlviztools/
Rscript prepare_example.R
cd shiny/
Rscript shiny/run_shiny.R
Please raise an issue on this github if you can't get the example app working.
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