.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/boots.R
R/grep_for_section.R
R/str_distances.R
README.md
data-raw/Executive_Summary.pdf
data-raw/Final_Addendum_QandA.pdf
data-raw/HCP_HB_cur.R
data-raw/HCP_HB_rev.R
data-raw/HCP_handbook_current_2016.pdf
data-raw/HCP_handbook_rev_draft_28Jun2016.pdf
data-raw/all_dists_df.rda
data-raw/all_dists_df.tsv
data-raw/appendix1.pdf
data-raw/appendix10.PDF
data-raw/appendix11.PDF
data-raw/appendix12.pdf
data-raw/appendix15.pdf
data-raw/appendix16.PDF
data-raw/appendix17.pdf
data-raw/appendix18.pdf
data-raw/appendix2.pdf
data-raw/appendix3.pdf
data-raw/appendix4.pdf
data-raw/appendix5.pdf
data-raw/appendix6.pdf
data-raw/appendix7.pdf
data-raw/appendix8.pdf
data-raw/appendix9part.pdf
data-raw/good_dists.tsv
data-raw/hcp_hb_chroms.xlsx
data-raw/hcpbk1.PDF
data-raw/hcpbk2.pdf
data-raw/hcpbk3.pdf
data-raw/hcpbk4-5.pdf
data-raw/hcpbk6.pdf
data-raw/hcpbk7-8.pdf
data-raw/hcpbkTOC.PDF
data-raw/misc_testing_code.R
data/all_dists_df.rda
data/hcp_cur_all.rda
data/hcp_cur_foc.rda
data/hcp_cur_sent.rda
data/hcp_rev_all.rda
data/hcp_rev_foc.rda
data/hcp_rev_sent.rda
data/mins_df.rda
hcphb.Rproj
man/boot_dists.Rd
man/calc_dist_ratio.Rd
man/create_mins_df.Rd
man/get_max_dist.Rd
man/get_min_dist.Rd
man/get_min_dists.Rd
man/summary_dists.Rd
test_dist.pdf
vignettes/HCPHB_topicmodels.Rmd
vignettes/compare_rev_cur.R
vignettes/compare_revision_current.Rmd
vignettes/compare_revision_current_cache/html/__packages
vignettes/compare_revision_current_cache/html/allbyall_1e9cba51b252ef34f0500f4fbb8dc61e.RData
vignettes/compare_revision_current_cache/html/allbyall_1e9cba51b252ef34f0500f4fbb8dc61e.rdb
vignettes/compare_revision_current_cache/html/allbyall_1e9cba51b252ef34f0500f4fbb8dc61e.rdx
vignettes/compare_revision_current_cache/html/ch1_dist_2c4316e2826f9b880983b68986948c34.RData
vignettes/compare_revision_current_cache/html/ch1_dist_2c4316e2826f9b880983b68986948c34.rdb
vignettes/compare_revision_current_cache/html/ch1_dist_2c4316e2826f9b880983b68986948c34.rdx
vignettes/compare_revision_current_cache/html/circos1_8e0ce3b56a66439fb8dc2d85b1ce0894.RData
vignettes/compare_revision_current_cache/html/circos1_8e0ce3b56a66439fb8dc2d85b1ce0894.rdb
vignettes/compare_revision_current_cache/html/circos1_8e0ce3b56a66439fb8dc2d85b1ce0894.rdx
vignettes/compare_revision_current_cache/html/exampledist_9a5effbdda5441cbe9b7ab14989d9920.RData
vignettes/compare_revision_current_cache/html/exampledist_9a5effbdda5441cbe9b7ab14989d9920.rdb
vignettes/compare_revision_current_cache/html/exampledist_9a5effbdda5441cbe9b7ab14989d9920.rdx
vignettes/compare_revision_current_cache/html/fig1_fdeec3a4a403351fe0a9331ac814d529.RData
vignettes/compare_revision_current_cache/html/fig1_fdeec3a4a403351fe0a9331ac814d529.rdb
vignettes/compare_revision_current_cache/html/fig1_fdeec3a4a403351fe0a9331ac814d529.rdx
vignettes/compare_revision_current_cache/html/fig2_456e25ff4f59a33b29af9bc92fd2062d.RData
vignettes/compare_revision_current_cache/html/fig2_456e25ff4f59a33b29af9bc92fd2062d.rdb
vignettes/compare_revision_current_cache/html/fig2_456e25ff4f59a33b29af9bc92fd2062d.rdx
vignettes/compare_revision_current_cache/html/unnamed-chunk-1_7cb436ac5a8f9ec5d065ab1c01de8dfa.RData
vignettes/compare_revision_current_cache/html/unnamed-chunk-1_7cb436ac5a8f9ec5d065ab1c01de8dfa.rdb
vignettes/compare_revision_current_cache/html/unnamed-chunk-1_7cb436ac5a8f9ec5d065ab1c01de8dfa.rdx
vignettes/compare_revision_current_cache/html/unnamed-chunk-2_b30bf8c18b0c1f0b3306dbeb01455efb.RData
vignettes/compare_revision_current_cache/html/unnamed-chunk-2_b30bf8c18b0c1f0b3306dbeb01455efb.rdb
vignettes/compare_revision_current_cache/html/unnamed-chunk-2_b30bf8c18b0c1f0b3306dbeb01455efb.rdx
vignettes/compare_revision_current_cache/html/unnamed-chunk-3_0f6778050d4017bf92294fa2a054617f.RData
vignettes/compare_revision_current_cache/html/unnamed-chunk-3_0f6778050d4017bf92294fa2a054617f.rdb
vignettes/compare_revision_current_cache/html/unnamed-chunk-3_0f6778050d4017bf92294fa2a054617f.rdx
vignettes/compare_revision_current_cache/html/unnamed-chunk-4_68b601cc28cc69aff5e401ed7e8f1fcd.RData
vignettes/compare_revision_current_cache/html/unnamed-chunk-4_68b601cc28cc69aff5e401ed7e8f1fcd.rdb
vignettes/compare_revision_current_cache/html/unnamed-chunk-4_68b601cc28cc69aff5e401ed7e8f1fcd.rdx
vignettes/compare_revision_current_cache/html/unnamed-chunk-5_3fb9b677440bd215cbac30e2b2baff0d.RData
vignettes/compare_revision_current_cache/html/unnamed-chunk-5_3fb9b677440bd215cbac30e2b2baff0d.rdb
vignettes/compare_revision_current_cache/html/unnamed-chunk-5_3fb9b677440bd215cbac30e2b2baff0d.rdx
vignettes/cur_10_ctm_90.rda
vignettes/cur_10_lda_90.rda
vignettes/cur_topic19_chunks.txt
vignettes/rev_10_ctm_90.rda
vignettes/rev_10_lda_90.rda
vignettes/rev_topic64_chunks.txt
vignettes/test.pdf
vignettes/topicmodel_notebook.Rmd
vignettes/topicmodel_notebook.nb.html