tax_table_to_phylo: Convert a tax table to a phylo object

In jacobbien/trac: Tree-based Aggregation of Compositional Data

Description

This is mostly the function as.phylo.formula from the ape package but modified so that interior nodes get labeled. Note: assumes that there are NOT single quotes around the labels.

Usage

tax_table_to_phylo(x, data = parent.frame(), collapse = TRUE, ...)

Arguments

x	a right-side formula describing the taxonomic relationship: ~C1/C2/.../Cn.
data	the data.frame where to look for the variables (default to user's workspace).
collapse	a logical value specifying whether to collapse single nodes in the returned tree (see details).
...	further arguments to be passed from other methods.

Author(s)

Julien Dutheil [e-mail] and Eric Marcon, modified by Jacob Bien

jacobbien/trac documentation built on Oct. 18, 2021, 9:30 p.m.