fasta: Obtain .fasta files from NCBI database
In jailagolden/package: Map organisms in the World map.
Description
Usage
Arguments
Value
Description
You have to perform a search in the NCBI database before you execute the function. The search results are stored in a list.
search <- entrez_search(db = "Nucleotide", term="genus", retmax = 100, api_key ="669d671ec088301f59dc01dd767127db2508")
Obtain fasta files
Usage
1
fasta(genus)
Arguments
genus
is the name of the genus you are obtaining fasta files for
genus_ids
is the ids that were obtained using entrez_search
Value
the fasta sequence from the database
jailagolden/package documentation built on Jan. 1, 2021, 4:26 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
You have to perform a search in the NCBI database before you execute the function. The search results are stored in a list. search <- entrez_search(db = "Nucleotide", term="genus", retmax = 100, api_key ="669d671ec088301f59dc01dd767127db2508") Obtain fasta files
Usage
1 | fasta(genus)
|
Arguments
genus |
is the name of the genus you are obtaining fasta files for |
genus_ids |
is the ids that were obtained using entrez_search |
Value
the fasta sequence from the database
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.