README.md

In jakeyeung/scchic-functions:

scchic-functions

Functions used in downstream sortChIC analysis, and stand-alone example scripts to run latent Dirichlet allocation, infer TF activites, and process bam files.

Installation as an R package

devtools::install_github("jakeyeung/scchic-functions")

Structure of R package

scchic-functions/R contains functions for downstream sortChIC analysis

scchic-functions/scripts/ridge_scripts contains functions to infer TF activities

scchic-functions/scripts/processing_scripts contains stand-alone bash scripts to run models such as latent Dirichlet allocation, GLMPCA, and processing bam files.

jakeyeung/scchic-functions documentation built on July 1, 2023, 3:51 p.m.