plotInteractionDetail: Plot a GenomicInteractions object with details for Enhancers

In jamesdalg/GS3DKViz: Extra functions and visualization for the GenoScan3DKnock package

Description

Creates a Gviz promoter-enhancer plot

Usage

plotInteractionDetail(
  gint,
  extra_prom_gr,
  chr,
  bounds_offset = 15000,
  main = NULL
)

Arguments

gint	genomic ranges object on a single chromosome
extra_prom_gr	A Genomic Ranges object containing extra promoters that are disconnected from interactions
chr	chromsome
bounds_offset	Beyond the largest and smallest elements, how much extra space in bp should be plotted?
main	character string for the title of the plot

Examples

#See example at the start of the vignette

jamesdalg/GS3DKViz documentation built on Jan. 1, 2021, 4:27 a.m.