Man pages for jameshay218/serosim2
Infection time and antibody dynamics model
| add_noise_func | Adds observation error |
| calculate_statistics | Calculate infection statistics from MCMC chains |
| convert_data_list_to_table | Converts list to table |
| convert_data_table_to_list | Convert data to list |
| cum_inc | Cumulative incidence conversion |
| error_checks | Checks that simulation paramters are error free |
| fluscape_data_manipulation | FluScape serology simulation |
| generateIncCurve | SIR inc curve |
| generate_infection_time | Random infection time sample |
| generate_toy_inc | Toy step incidence generator |
| generate_uniform_inc | Uniform incidence generator |
| get_infection_ratios | Get posterior propn |
| individual_simulation | Individual serology simulation |
| likelihood_titre | Calculate likelihood |
| multiple_strains | Wrapper for the model |
| overall_simulation | Serosurvey simulation function |
| plot_serology | Serological data plot |
| plotSIR | SIR plot |
| save_all_data | Save data |
| save_ini_pars | Save ind pars |
| seroconversion_check | Check for seroconversion |
| serosim2 | Infection time and antibody dynamics model |
| SIRsim | SIR simulation |
| testFunc | Test func |
| toUnitScale | Converts to unit scale |
