Optimal global allocation of vaccinations during a pandemic
Testing link to vignette, if needed.
local_dir
).outputs
. The simulation outputs will be saved here. remote_dir
). Make two subdirectories in remote_dir
, called outputs
and data
respectively. Copy everything in the data
directory of this repository into remote_dir/data
.didehpc
options (as in the instructions) are configured in get_user_options
. Make sure that wd
and package_dir
are set to remote_dir
and local_dir
respectively.user <- "ayan"
with your username, and package_dir <- "~/Documents/vaxedemic/"
with your local directory.cluster <- TRUE
near the top of scripts/example.R if running on the cluster, otherwise replace with cluster <- FALSE
.run_fixed <- TRUE
near the top of scripts/example.R if running for a fixed set of parameters, otherwise replace with run_fixed <- FALSE
to run for many combinations of parameters.devtools::install_github("jameshay218/vaxedemic")
GPL-3 © James Hay <james.hay13@imperial.ac.uk>.
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