API for jamieobrett/multiomics
Analysis of Multiple Molecular Datasets of Different Types
| Global functions | |
|---|---|
| IDtoRowName | Source code |
| aggregateRanks | Source code |
| convertGeneIDs | Source code |
| convertKEGG | Source code |
| convertMetaboliteIDs | Source code |
| convertPathwayInfo | Source code |
| deduplicateByID | Source code |
| enrichGSEA | Source code |
| enrichPGSEA | Source code |
| filterPathways | Source code |
| getBIOCYC | Source code |
| getRankVectorPvals | Source code |
| getReadHttp | Source code |
| imputeZeros | Source code |
| indivEnrichment | Source code |
| makeBIOCYCcompoundTable | Source code |
| makeBIOCYCpathwayTables | Source code |
| makeBIOCYCpathwaynameTable | Source code |
| makeCLS | Source code |
| makeConstants | Source code |
| makeGCT | Source code |
| makeKEGGcompoundTable | Source code |
| makeKEGGgeneTables | Source code |
| makeKEGGpathwayTables | Source code |
| makeKEGGpathwaynameTables | Source code |
| makeMBROLEcompoundTable | Source code |
| makeMETABOANALYSTcompoundTable | Source code |
| makeMetabolitesConversionTable | Source code |
| makePathwaysInfoTable | Source code |
| makeREACTOMEpathwayTables | Source code |
| makeREACTOMEpathwaynameTable | Source code |
| makeWIKIPATHWAYSpathwayTables | Source code |
| makeWIKIPATHWAYSpathwaynameTable | Source code |
| mergeConversionVectorTable | Source code |
| overrepresentation | Source code |
| prepareRankLists | Source code |
| readData | Source code |
| readFilelist | Source code |
| readMetadata | Source code |
| readTables | Source code |
| removeSamples | Source code |
| retrievePathwaysNameAndType | Source code |
| robustAggregateRanks | Source code |
| simpleGeneIDConversion | Source code |
| simpleMetabIDConversion | Source code |
| tableToGMT | Source code |
| writeOutput | Source code |
