In jamorrison/biscuiteerData: Data Package for Biscuiteer

BiscuiteerData

biscuiteerData is a complementary package to the Bioconductor package biscuiteer. It contains a handful of datasets to be used when running functions in biscuiteer.

Quick Start

Installing

From Bioconductor,

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("biscuiteerData")

A development version is available on GitHub and can be installed via:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("trichelab/biscuiteerData")

Usage

biscuiteerData data is accessible using the biscuiteerDataGet function:

library(biscuiteerData)
PMDs.hg19 <- biscuiteerDataGet("PMDs.hg19.rda")

A list of the titles for the available data can be retrieved via:

biscuiteerDataList()

A list of all versions (where the versions are the dates uploaded) is produced via:

biscuiteerDataListDates()

An older version of the data can be retrieved using the dateAdded argument of biscuiteerDataGet:

PMDs.hg19 <- biscuiteerDataGet("PMDs.hg19.rda", dateAdded = "2019-09-25")

jamorrison/biscuiteerData documentation built on Nov. 4, 2019, 2:17 p.m.