Files in jan-glx/pertInv
An R package to reproduce the analysis and figures presented in my master thesis
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.template
NAMESPACE
R/common.R
R/deconv.R
R/reproducing.R
R/stanc_model_builder.R
R/zzz.R
README.md
inst/scripts/01bc_simulate_example_graph.R
inst/scripts/06ab_A1_mean_variance_relationship.R
inst/scripts/07_Bayesian_deconvolution.R
inst/scripts/08ab_10b_tSNE.R
inst/scripts/10a_13_all_guide_effects.R
inst/scripts/11_genewise_variacne_decomposition.R
inst/scripts/12_genewise_variacne_decomposition_permutation.R
inst/scripts/14_15_simulate_effect_of_noise_on_icp.R
inst/scripts/16_17ab_18_19_20_knockout_inference.R
inst/scripts/21_additional_advantage_of_inferred_knockout_state.R
inst/scripts/23ab_24_stan_simulate_and_fit.R
inst/scripts/4ab_5ab_9abc_quality_control_preprocessing.R
inst/stan_files/1C_fit_vec_nb_disc.stan
inst/stan_files/1C_simulate.stan
inst/stan_files/chunks/1C_latent_cont.stan
inst/stan_files/chunks/1C_prior_params.stan
inst/stan_files/chunks/1_latent_disc.stan
inst/stan_files/chunks/1_observed.stan
inst/stan_files/chunks/1_size.stan
inst/stan_files/functions/common.stan
inst/stan_files/functions/index_set_diff.stan
man/figure1.Rd
man/pertInv.Rd
man/reproduce_all.Rd
man/reproduce_figure.Rd
man/setup_data.Rd
pertInv.Rproj
