Build a consistent and WoRMS complient taxonomic dataset. Add the respective valid taxa to your taxonimic dataset. For your taxa, add the respective valid taxa to your taxonimic dataset. For your taxa, get the Aphia ID of the currently accepted taxon, which is not neccessarily identical to the valid Aphia id provided by WoRMS (AFAIunderstood in case of deleted or resurrected taxa).
Just issue
devtools::install_github("janhoo/worms")
You may need to (install.packages("devtools")
) first.
Done.
issue library(worms)
,
use the package documentation, e.g.,
type ?worms
and check the index to read function documentation
git checkout -b my-new-feature
git commit -am 'Add some feature'
git push origin my-new-feature
This code is licensed to you under the terms of the GNU AFFERO GENERAL PUBLIC LICENSE version 3.0 or higher.
Holstein (2017). worms: A WoRMS RESTful webservice to scrape Aphia information from World Register of Marine Species. R package version 1.0.0. https://CRAN.R-project.org/package=worms
**1.0.1 minor bugfixes
1.0.0 major update of wormsbynames breaks backwards compatibility + minor bugfixes different arguments and defaults for wormsbynames wormsbymatchnames is deprecated. Functionality is in wormsbynames now wormsbynames* alway outputs a dataframe of input vector length, even if not a single hit.
0.2.2 error fixes fixed an error in examples where wormsbynames() would terminate due to changes in dependencies. changed default. Now wormsaccepted(..., once = FALSE, ...) which is the supposed usecase.
0.2.1 better documentation, verbose behavior
0.2.0 implements new methods and data
Todo / Known Bugs
0.1.0 retrieves WoRMS Aphia information and turns them into a data.frame
Releases will be numbered with the following semantic versioning format: major.minor.patch
And constructed with the following guidelines:
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