pca_prop_var: PCA Proportion of Variation

In jankinsan/BatchEC: Evaluates and corrects batch effects in gene expression data

Description

Calculates and plots the proportion of variation for twenty-five Principal Components of expression data before and after batch correction

Usage

pca_prop_var(
  batch.title,
  NameString = "",
  exprData1,
  exprData2,
  return.plot = FALSE
)

Arguments

batch.title	The tile of the batch
NameString	string that will be appear in all output filenames. Default="" (empty string)
exprData1	A matrix containing the gene Expression data before batch correction
exprData2	A matrix containing the gene Expression data after batch correction
return.plot	Should the plot be returned as an object to the environment? If FALSE, plot is saved to a pdf file, if TRUE, plot is returned to the environment. Default = FALSE

jankinsan/BatchEC documentation built on Sept. 9, 2021, 8:12 p.m.