Inference for Hidden Markov and Semi-Markov Models

addStates | Adds a bar representing state sequence. |

dmvnorm.hsmm | Emission ensity function for a multivariate normal emission... |

dnorm.hsmm | Emission density function for normal emission distribution |

dpois.hsmm | Emission density function for Poisson emission distribution |

gammafit | Parameter estimation for the Gamma distribution |

hmmfit | fit a hidden Markov model |

hmmspec | Specificatin of HMMs |

hsmmfit | fit a hidden semi-Markov model |

hsmmspec | Hidden semi-Markov model specification |

mstep.mvnorm | Performs re-estimation (the M-step) for a multivariate normal... |

mstep.norm | Performs re-estimation (the M-step) for a normal emission... |

mstep.pois | Performs re-estimation (the M-step) for a Poisson emission... |

plot.hsmm | Plot function for hsmms |

plot.hsmm.data | Plot function for hsmm data |

predict.hmm | Prediction function for hmm |

predict.hmmspec | Prediction function for hmmspec |

predict.hsmm | Prediction for hsmms |

predict.hsmmspec | Prediction for hsmmspec |

print.hmm | Print method for hmm objects |

print.hmmspec | Print function for hmmspec |

print.hsmmspec | Print function for hsmmspec |

reproai | Artificial insemination times for seven cows |

reprocows | Reproductive data from seven dairy cows |

reproppa | Observed lengths of post-partum anoestrus for 73 dairy cows |

rmvnorm.hsmm | Random number generation from a multivariate normal... |

rnorm.hsmm | Random number generation from a normally distributed emission... |

rpois.hsmm | Random number generation from a Poisson distributed emission... |

sim.mc | Markov chain simulation |

simulate.hmmspec | Simulation of hidden Markov models |

simulate.hsmmspec | Simulation for HSMMs |

smooth.discrete | Smoothing a discrete time series. |

summary.hmm | Summary method for hmm objects |

summary.hsmm | Summary function for hsmm |

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