Man pages for jasondubois/spopmodel
Methods for and Application of Fish Population Dynamics Model
| AdjustedFreq | Get adjusted frequency based on relative retention results. |
| age_dist | Age frequency of San Francisco Estuary-based White Sturgeon. |
| AgeEach | Assign age to each fish based on extant age-length data. |
| ApplyNetFit | Apply Millar's 'NetFit' to catch data using gill net or... |
| BackCalcLength | Uses Dahl-Lea method to back-calculate length at age. |
| ChapmanRobson | Calculates survival rate given age frequency. |
| DescStat | Calculates descriptive statistics of 'x'. |
| DeviancePlots | Generate Millar's deviance plots for gear selectivity. |
| Exploitation | Calculcates adjusted exploitation rate mu\prime. |
| fin_ray_aging | Fin Ray Analysis of San Francisco Estuary-based White... |
| FitVBGM | Fits von Bertalanffy growth model (VBGM) using 'stats::nls'. |
| Frequency | Create a frequency distribution of 'x' by 'binWidth'. |
| input | Suite of functions to generate model data inputs. |
| Lambda | Calculate Mean Population Growth Rate. |
| LoadMillarCode | Download R. Millar gear selectivity code. |
| MakeALKey | Make an age-length key with lengths as rows and ages as... |
| number_eggs | Number of eggs by age for San Francisco Estuary-based White... |
| plot.Frequency | Generate base R histogram from object of class 'Frequency'. |
| plot.RelativeRetention | Plot relative retention values for each gear size. |
| PopProjections | Get population projection over defined period (years). |
| prob_spawn | Spawning probability by age for San Francisco Estuary-based... |
| prob_survival | Survival probability by age for San Francisco Estuary-based... |
| RelativeRetention | Get gear relative retention based on net fit model output. |
| ReportingRate | Calculates angler reporting rate of non-reward tags. |
| Simulations | Generate simulations for stochastic modeling of population... |
| spopmodel | spopmodel: A package for modeling fish population dynamics. |
| spopmodel-internals | Internal functions for 'spopmodel'. |
| trammel_catch | Catch data of San Francisco Estuary-based White Sturgeon. |
