Man pages for jasonleebrown/humboldt
Analysis of Species in Environmental Space

background.iter.e.old	internal fuction
background.iter.r	internal fuction
env1	Example Data: Bioclimatic data for the Americas and...
env2	Example Data: Bioclimatic data for Europe and surrounding...
equivalency.iter	internal fuction
humboldt.accessible.e.distance	Measure the effects of accessible environment distance in...
humboldt.background.stat	Niche background statistic
humboldt.background.test	Niche background test
humboldt.doitall	'Do it all'. Performs most analyses in Humboldt and outputs...
humboldt.equivalence.stat	Niche equivalence statistic
humboldt.equivalency.test	Niche equivalency test
humboldt.espace.correction	Espace correction of environmental abundance test
humboldt.g2e	Convert geographic space to shared environmental space
humboldt.grid.espace	Create a grid of environmental space
humboldt.niche.overlap	Measure niche similarity
humboldt.niche.similarity	Measure niche similarity
humboldt.occ.rarefy	Rarefy occurrence points
humboldt.plot.contrib	Plot PCA contribution to environmental space
humboldt.plot.density	Plot equivalence or background statistic: simulation density...
humboldt.plot.espace.diff	Plot differences in espace between environments and species'...
humboldt.plot.histrogram	Plot equivalency or background statistics: simulation...
humboldt.plot.niche	Plot niche
humboldt.plot.overlap	Plot niche overlap of 2 species in environmental space
humboldt.plot.scatter	Density scatter plots with histograms on each axis
humboldt.pnt.index	Measure potential niche truncation index
humboldt.sample.spp	Sample environment to occurrence points
humboldt.scrub.env	Scrub environment data
humboldt.top.env	Select top environmental variables for PCA
sp1	Example Data: Conium maculatum's native distribution
sp2	Example Data: Conium maculatum's invasive distribution in...