TyphoonPlot: TyphoonPlot: A package for creating a TyphoonPlot

Description Required Packages TyphoonPlot Processing Functions TyphoonPlot Graphing Functions TyphoonPlot Density Smoothing Functions

Description

The TyphoonPlot package provides helper processing and graphics functions to display paired-end next-generation sequencing data in a helpful visualization format

Required Packages

This package requires the following packages: GenomeInfoDb (>= 1.2.4), GenomicRanges (>= 1.18.4), gplots (>= 2.16.0), IRanges (>= 2.0.1), Rsamtools (>= 1.18.3), S4Vectors (>= 0.4.0), splus2R (>= 1.2.0)

TyphoonPlot Processing Functions

GetTyphoonPlotMat

TyphoonPlot Graphing Functions

DensDotPlot MakeGeneSchematic MakeIndividualTyphoonPlot MakeTyphoonPlotAxes MergeCoveragePlot SetChromatinSchematic PlotNucleosome PlotNucleosomeModel

TyphoonPlot Density Smoothing Functions

ConvertPairedReadBAMToGR GetDensityPeaks GetMNaseFeatureDensity


jbelsky/TyphoonPlot documentation built on June 5, 2017, 5:12 p.m.