Description Required Packages TyphoonPlot Processing Functions TyphoonPlot Graphing Functions TyphoonPlot Density Smoothing Functions
The TyphoonPlot package provides helper processing and graphics functions to display paired-end next-generation sequencing data in a helpful visualization format
This package requires the following packages: GenomeInfoDb (>= 1.2.4), GenomicRanges (>= 1.18.4), gplots (>= 2.16.0), IRanges (>= 2.0.1), Rsamtools (>= 1.18.3), S4Vectors (>= 0.4.0), splus2R (>= 1.2.0)
GetTyphoonPlotMat
DensDotPlot MakeGeneSchematic MakeIndividualTyphoonPlot MakeTyphoonPlotAxes MergeCoveragePlot SetChromatinSchematic PlotNucleosome PlotNucleosomeModel
ConvertPairedReadBAMToGR GetDensityPeaks GetMNaseFeatureDensity
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