Man pages for jburos/fcutils
Working with FeatureCounts: Utilities for RNASeq Expression Analysis
| clean_file_names | Clean file names by removing longest common substring from... |
| color_from_middle | modify coloring in DT::datatable json based on work by... |
| common_substrings | Find all common substrings of two strings Based on... |
| convert_ensembl2entrez | Given featurecounts matrix & annotation, roll results up to... |
| create_deseq2_result | summarize expr data as DESeqDataSet importFrom DESeq2... |
| create_edger_result | Summarise expr data as DGEList object importFrom edgeR... |
| fcutils_options | Set or get options for fcutils package |
| fcutils_options_reset | Reset global options for fcutils |
| filter_low_counts | Filter out genes/transcripts with low expression |
| get_expr_data | Summarise expression data as DGEList object |
| get_featurecounts_files | List files containing featurecounts summaries by gene |
| get_gene_annotation | return gene annotation from ensembl ids |
| get_gene_names | get gene names from entrez or ensembl ids |
| load_data_from_feature_counts | load data from featurecounts borrowed from... |
| longest_common_substring | given a list of strings a, find the longest substring common... |
| longest_string | Return the longest string of a vector/list of strings s |
| volcano_plot | generate volcano plot from deseq2 result |
| with_filecache | Execute an expression, while saving result to a local file |
| wrapup_for_iSEE | Prepare summarized experiment from deseq2 result, for use in... |
