Files in jcalendo/coriell
Convenience Functions for Bioinformatics
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/colors.R
R/data.R
R/dim-reduction.R
R/edger-to-df.R
R/get-axis-limits.R
R/horvath-age.R
R/list-to-matrix.R
R/meta-analysis.R
R/outliers.R
R/pairwise-fisher-test.R
R/panther-go.R
R/permutation.R
R/plot-boxplot.R
R/plot-cor-pairs.R
R/plot-density.R
R/plot-dist.R
R/plot-md.R
R/plot-parallel.R
R/plot-umap.R
R/plot-volcano.R
R/quickmap.R
R/rank-threshold.R
R/rarefy.R
R/read-bismark.R
R/simulate-counts.R
R/summarize-dge.R
R/themes.R
R/utils.R
README.md
_pkgdown.yml
data/GSE161650_de.rda
data/GSE161650_lc.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/Practical-analysis-with-SummarizedExperiments.html
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docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GSE161650_de.html
docs/reference/GSE161650_lc.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/UMAP.html
docs/reference/associate_components.html
docs/reference/clamp.html
docs/reference/clr.html
docs/reference/colmean.html
docs/reference/dfs2se.html
docs/reference/distinct_rgb_palette.html
docs/reference/dot-pileup2dt.html
docs/reference/edger_to_df.html
docs/reference/env2global.html
docs/reference/exact_cor_test.html
docs/reference/figures/boxplot.png
docs/reference/figures/boxplot2.png
docs/reference/figures/density.png
docs/reference/figures/density2.png
docs/reference/figures/md1.png
docs/reference/figures/md2.png
docs/reference/figures/md3.png
docs/reference/figures/md4.png
docs/reference/figures/md5.png
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docs/reference/horvath_age-1.png
docs/reference/horvath_age.html
docs/reference/impute.html
docs/reference/index.html
docs/reference/jackknifeSE.html
docs/reference/lerp.html
docs/reference/list_to_matrix.html
docs/reference/map_value.html
docs/reference/meta_de.html
docs/reference/minmax.html
docs/reference/outliers_by_iqr-1.png
docs/reference/outliers_by_iqr.html
docs/reference/pairwise_fisher_test.html
docs/reference/pairwise_intersections.html
docs/reference/panther_go.html
docs/reference/permutation_correlation_test.html
docs/reference/permutations.html
docs/reference/pileup_profile.html
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docs/reference/quickmap-1.png
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docs/reference/rank_threshold.html
docs/reference/rarefy.html
docs/reference/read_bismark.html
docs/reference/remove_components.html
docs/reference/remove_var.html
docs/reference/sample_n_random_cor.html
docs/reference/simulate_counts.html
docs/reference/strip_ens.html
docs/reference/summarize_dge.html
docs/reference/theme_coriell-1.png
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docs/search.json
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index.md
inst/rmarkdown/templates/gc-analysis-template/skeleton/skeleton.Rmd
inst/rmarkdown/templates/gc-analysis-template/template.yaml
man/GSE161650_de.Rd
man/GSE161650_lc.Rd
man/UMAP.Rd
man/associate_components.Rd
man/clamp.Rd
man/clr.Rd
man/colmean.Rd
man/dfs2se.Rd
man/distinct_rgb_palette.Rd
man/edger_to_df.Rd
man/env2global.Rd
man/exact_cor_test.Rd
man/figures/boxplot.png
man/figures/boxplot2.png
man/figures/density.png
man/figures/density2.png
man/figures/md1.png
man/figures/md2.png
man/figures/md3.png
man/figures/md4.png
man/figures/md5.png
man/figures/parallel.png
man/figures/parallel2.png
man/figures/quickmap1.png
man/figures/quickmap2.png
man/figures/quickmap3.png
man/figures/quickmap4.png
man/figures/volcano1.png
man/figures/volcano2.png
man/figures/volcano3.png
man/figures/volcano4.png
man/figures/volcano5.png
man/geometric_mean.Rd
man/get_axis_limits.Rd
man/horvath_age.Rd
man/impute.Rd
man/jackknifeSE.Rd
man/lerp.Rd
man/list_to_matrix.Rd
man/map_value.Rd
man/meta_de.Rd
man/minmax.Rd
man/outliers_by_iqr.Rd
man/pairwise_fisher_test.Rd
man/pairwise_intersections.Rd
man/panther_go.Rd
man/permutation_correlation_test.Rd
man/permutations.Rd
man/plot_boxplot.Rd
man/plot_cor_pairs.Rd
man/plot_density.Rd
man/plot_dist.Rd
man/plot_md.Rd
man/plot_parallel.Rd
man/plot_umap.Rd
man/plot_volcano.Rd
man/quickmap.Rd
man/random_rgb_palette.Rd
man/rank_threshold.Rd
man/rarefy.Rd
man/read_bismark.Rd
man/remove_components.Rd
man/remove_var.Rd
man/sample_n_random_cor.Rd
man/simulate_counts.Rd
man/strip_ens.Rd
man/summarize_dge.Rd
man/theme_coriell.Rd
tests/testthat.R
tests/testthat/test-colors.R
tests/testthat/test-edger-to-df.R
tests/testthat/test-horvath-age.R
tests/testthat/test-summarize-dge.R
tests/testthat/test-umap.R
vignettes/.gitignore
vignettes/articles/Practical-analysis-with-SummarizedExperiments.Rmd
vignettes/articles/rnaseq-workflow.Rmd
vignettes/articles/summarized-experiments.png
