set_species: Set initial parameter values in Species objects.

In jcpayne/mice-models: Model of Intermediate Complexity for Ecosystem Assessment

Description

Set initial parameter values in Species objects.

The default method sets parameter values in a Species object. It calls functions to read in parameters from input files, and to initialize arrays.

The method for predators also reads in a predator's diet preferences (for prey species and the age-classes of those prey). Does not read in G.

The method for anchovy also reads in a set of recruitment residuals.

Usage

set_species(species, params, ...)

## S4 method for signature 'Species,simulationParams'
set_species(species, params, ...)

## S4 method for signature 'Predator,simulationParams'
set_species(species, params, preynames)

## S4 method for signature 'Anchovy,simulationParams'
set_species(species, params, preynames)

Arguments

...	Other arguments (from child methods).
species.	A Species object.
params.	A simParams object.

Value

A child method, depending on signature.

Methods (by class)

• species = Species,params = simulationParams: Default method.

• species = Predator,params = simulationParams: Also reads in diet preferences.

• species = Anchovy,params = simulationParams: Also reads in recruitment residuals.

See Also

Other parameter setting: get_params, get_prefs, initialize_N, set_simParam

Examples

speciesA<-set_species(speciesA)

jcpayne/mice-models documentation built on May 18, 2019, 10:25 p.m.