simulationParams-class: An S4 class to hold global parameters and input data for...

In jcpayne/mice-models: Model of Intermediate Complexity for Ecosystem Assessment

Description

Species-specific parameter values are held in two dataframes. Global values have their own slots. This class is used to read input data from external files, and is later used to initialize Species objects with species-specific parameter values.

Value

A simulationParams object.

Slots

name

character. The object name (should match the name of the class).

nYears

numeric. Number of years for the simulation.

nSteps

numeric. Number of timesteps per year (may not be used by all species)

scenario

character. A name for the scenario, which must match a column name in input_params.csv.

params

A dataframe that holds parameter values for everything except diet preferences.

diet_prefs

A dataframe that holds diet preferences for predators.

envir_periods

A dataframe that holds a set of environmental driver period lengths for each prey species

anchovy_residuals.

A set of observed stock-recruit residuals for anchovies.

jcpayne/mice-models documentation built on May 18, 2019, 10:25 p.m.