MIGSAres-getAdditionalInfo: Gets additional information about enrichment results

In jcrodriguez1989/MIGSA: Massive and Integrative Gene Set Analysis

Description

getAdditionalInfo gets additional enrichment information of the analysis done.

Usage

getAdditionalInfo(migsaRes)

## S4 method for signature 'MIGSAres'
getAdditionalInfo(migsaRes)

Arguments

migsaRes

MIGSAres object.

Value

data.frame with additional information for each analyzed gene set.

See Also

setEnrCutoff

Examples

data(migsaRes)
## Lets get additional enrichment information of the MIGSAres object.
adtnlInfo <- getAdditionalInfo(migsaRes)
dim(adtnlInfo)
# it is a huge data.frame

## This huge amount of information commonly is not that interesting. Lets
## keep the gene sets that were enriched in every experiment and check that
## information. Lets set a cutoff of 0.1.
migsaResWCoff <- setEnrCutoff(migsaRes, 0.1)
migsaResFiltered <- migsaResWCoff[rowSums(migsaResWCoff[, 4:5]) == 2, ]
adtnlInfo <- getAdditionalInfo(migsaResFiltered)
dim(adtnlInfo)

jcrodriguez1989/MIGSA documentation built on Nov. 1, 2020, 8:04 a.m.