dummyData: Dummy data to execute mGSZ example

In jcrodriguez1989/mGSZ2:

Description

Data generated in mGSZ example as follows: gene.names <- paste("g",1:100, sep = "")

# create random gene expression data matrix

set.seed(100) x <- matrix(rnorm(100*10),ncol=10) rownames(x) <- gene.names b <- matrix(2*rnorm(50),ncol=5) ind <- sample(1:10,replace=FALSE) x[ind,6:10] <- x[ind,6:10] + b

l <- rep(1:2,c(5,5))

# create random gene sets

y <- vector("list", 20) for(i in 1:length(y)) y[[i]] <- sample(gene.names, size = 10) names(y) <- paste("set", as.character(1:20), sep="")

dummyData <- list(x=x, y=y, l=l)

# can be used by doing: mGSZres <- mGSZ2(dummyData$x, dummyData$y, dummyData$l);

Usage

data(dummyData)

jcrodriguez1989/mGSZ2 documentation built on May 24, 2019, 9:51 a.m.