API for jdidion/intensities
Functions to work directly with raw genotype array intensity data.

Global functions
as.geno.list Source code
as.snp.list Source code
baf.lrr Source code
bound Source code
calc.copy.number.metrics Source code Source code
calc.params Source code Source code
cn Source code
create.cluster.file Source code
est.purity Source code
fill.in Source code
fill.in.missing.intervals Source code
filter.params Source code
get.copy.number.metrics Source code
intensity.dist Source code
is.dir Source code
is.num Source code
mean.cn Source code
my.mean Source code
my.sd Source code
plot.baf Source code
plot.cn Source code
plot.cn.results Source code
plot.copy.number.metrics Source code
plot.sample.copy.number.data Source code
plot.sample.copy.number.metrics Source code
plot.scatter.with.trend.and.outliers Source code
prepare.clusters Source code
prepare.reporters Source code
summarize Source code
tQN Source code
tQN.files Source code
tQN.matrix Source code
theta Source code
tqn.normalize Source code
write.segments Source code
zscore Source code
jdidion/intensities documentation built on Aug. 25, 2017, 1:05 p.m.