In jdidion/knitrtools: Tools to simplify writing knitr documents.

# Load libraries
library(knitrtools)

# Define Knitr defaults
knitr::opts_chunk$set(echo=FALSE, cache=TRUE, warning=FALSE, message=FALSE,
                      dpi=150, fig.width=7.5, fig.height=6.5, fig.align='center', 
                      dev='pdf')
knitr::opts_knit$set(root.dir=".") # Change root dir here

# Define other defaults
pander::panderOptions('table.split.table', Inf)

Overview

Materials

pander::pander(readxl::read_excel("materials.xlsx"))

Reagents

# Could also load solutions from
# an R data file
# load.solutions("solutions.RData")
solution("Lysis buffer 1",
    "10 mmol Tris",
    "10 mmol NaCl",
    "0.2 % Igepal",
    "1 unit protease inhibitor"
)

r reagents( "2 L of Lysis buffer 1", "..." )

Day 1

r multiday.protocol( "Day 1" = protocol( "Centrifuge cells for [1 min]", "Resuspend cells in 20 mL of EGS {WARN EGS is toxic}" ), ... )

jdidion/knitrtools documentation built on May 18, 2019, 11:30 p.m.