write.qvalue: Write results to file

In jdstorey/qvalue: Q-value estimation for false discovery rate control

Write results to file

Description

Write the results of the q-value object to a file.

Usage

write.qvalue(x, file = NULL, sep = " ", eol = "\n", na = "NA",
  row.names = FALSE, col.names = TRUE)

Arguments

x	A q-value object.
file	Output filename (optional).
sep	Separation between columns.
eol	Character to print at the end of each line.
na	String to use when there are missing values.
row.names	logical. Specify whether row names are to be printed.
col.names	logical. Specify whether column names are to be printed.

Details

The output file includes: (i) p-values, (ii) q-values (iii) local FDR values, and (iv) the estimate of \pi_0, one per line. If an FDR significance level was specified in the call to qvalue, the significance level is printed and an indicator of significance is included.

Value

Nothing of interest.

Author(s)

John D. Storey, Andrew J. Bass

See Also

qvalue, plot.qvalue, summary.qvalue

Examples

# import data
data(hedenfalk)
p <- hedenfalk$p

# write q-value object
qobj <- qvalue(p)
write.qvalue(qobj, file="myresults.txt")

jdstorey/qvalue documentation built on Sept. 9, 2023, 1:50 p.m.