setup_cause_pipeline: Set up analysis directory for pairs of GWAS summary...
In jean997/cause: CAUSE: Causal Analysis Using Summary Effect Estimates

A helper function that prepares a working directory for running an analysis with CAUSE.

1	setup_cause_pipeline(download_ldshrink = FALSE, download_eur_ld_scores = FALSE)

`download_ldshrink`	If TRUE the function will download LDshrink LD estimates for european subset of 1k genomes
`download_eur_ld_scores`	If TRUE the function will download LD scores needed for running LCV.

This function downloads Snakemake pipeline and R code needed to run CAUSE on many pairs of traits.

jean997/cause documentation built on Dec. 25, 2021, 10 p.m.

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README.md

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