Files in jean997/mrScan

Empirical Shrinkage Mendelian Randomization

LICENSE.md R/aic.R R/best_combinations.R R/checks.R R/complete_T.R R/dag_utils.R R/direct_to_total.R R/esmr.R R/esmr_solve.R R/estimate_G.R R/feedback_arc_set.R R/frob_norm_logdet.R R/grad_log_py.R R/graph_prior.R R/graphcml_utils.R R/helpers.R R/helpers_tau.R R/initialize.R R/is_dag.R R/likelihood_funcs.R R/log_sum_exp.R R/logdet.R R/matrix.R R/matrix_utils.R R/nesmr_all_permn.R R/nesmr_backselect.R R/nesmr_complete.R R/package.R R/project_to_dag.R R/topo_sort.R R/update_beta_joint.R R/update_beta_sequential.R R/update_l.R R/update_tau.R R/winners_curse_adj.R README.md man/complete_T.Rd man/esmr.Rd man/is_psd.Rd man/optimize_lpy2.Rd man/snp_beta_rb.Rd man/solve_diag_psd_diag.Rd pipeline/R/1_format_data_withukb.R pipeline/R/2_combine_data_vcf.R pipeline/R/3_ld_prune_chrom_plink_seed.R pipeline/R/3_subset_zmat.R pipeline/R/4_ldsc_mat.R pipeline/R/5_run_bee.R pipeline/R/5_run_esmr.R pipeline/R/5_run_grapple.R pipeline/R/5_run_ivw.R pipeline/plot_results.R tests/testthat/test-log_sum_exp.R