inst/tinytest/test-human_aa.R
In jedick/canprot: Chemical Analysis of Proteins
# Tests added on 20250303
info <- "Retrieval using UniProt ID"
pdat <- human_aa("P24298")
expect_equal(pdat$protein, "sp|P24298|ALAT1", info = info)
info <- "Warning for duplicates"
expect_warning(human_aa(rep("P24298", 2), warn_if_duplicated = TRUE), "some uniprot IDs are duplicated: P24298", info = info)
info <- "Get amino acid compositions from file"
# NOTE: this file doesn't contain human proteins, but we can use it anyway
aa_file <- system.file("extdata/aa/methanogen_aa.csv", package = "canprot")
pdat <- human_aa("2190", aa_file = aa_file)
expect_equal(pdat$organism, "Methanocaldococcus jannaschii")
jedick/canprot documentation built on June 13, 2025, 10:13 p.m.
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# Tests added on 20250303
info <- "Retrieval using UniProt ID"
pdat <- human_aa("P24298")
expect_equal(pdat$protein, "sp|P24298|ALAT1", info = info)
info <- "Warning for duplicates"
expect_warning(human_aa(rep("P24298", 2), warn_if_duplicated = TRUE), "some uniprot IDs are duplicated: P24298", info = info)
info <- "Get amino acid compositions from file"
# NOTE: this file doesn't contain human proteins, but we can use it anyway
aa_file <- system.file("extdata/aa/methanogen_aa.csv", package = "canprot")
pdat <- human_aa("2190", aa_file = aa_file)
expect_equal(pdat$organism, "Methanocaldococcus jannaschii")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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