Description Usage Arguments Value
After downloading the FASTA for a genome using
syncFasta
, this function loads a given
chromosome only into a DNAStringSet
object.
1 |
genome |
The UCSC string specific to the genome to be downloaded (e.g. "hg19", "hg19", "mm10", etc) |
chr |
The string specific to the chromosome to load (e.g. "chr1", "chr22", "chr_M", "chr1_random", etc) |
local |
The root of a local directory where all files downloaded from UCSC are stored |
A DNAStringSet
object with one sequence for the
chromosome from UCSC's FASTA release for the given
genome.
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