Description Usage Arguments Details Value See Also Examples
View source: R/write_neurons_for_amira.R
Note that this function only works for neuron (rather than dotprops) objects and is limited to a single level directory hierarchy to organise the neurons.
1 | write_neurons_for_amira(nl, rdir, score = 4, ...)
|
nl |
a neuron list containing traced neurons |
rdir |
The root directory of the project |
score |
Default integer score for each neuron, or a function to be applied to the path of each output neuron file which returns integer scores. See details. |
... |
Additional arguments for |
The score
of a neuron was traditionally used to limit which neurons
were displayed in Amira by recording a user-defined assessment of how well
registered each brain was on a 1 to 5 scale. It may also be used to define a
display hierarchy such that no more than n neurons should be displayed.
Path to the master script object to open in Amira
1 2 3 4 5 6 | td=tempdir()
master_script=write_neurons_for_amira(Cell07PNs, td, subdir=Glomerulus)
## Not run:
open_amira(master_script)
## End(Not run)
|
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